Skill scanner now walks .claude/skills and .codex/skills directories
separately, adds relative_path/system fields to DiscoveredSkill, and
supports root-level SKILL.md. Update chat context and join request
handling.
Add scan_repo_tree_for_skills and scan_skills_from_tree functions that
traverse git objects directly instead of filesystem, enabling skill
discovery in bare repositories created via git2::Repository::init_bare.
- Change deduplication key from slug to {repo_id}+{blob_hash}
- Keep latest version by commit_sha when duplicates found
- Use git2 to open repos and get correct workdir and commit_sha
- Fix case-insensitive SKILL.md detection in scanner
- After issue_create: spawn embed_issue_chunked (non-blocking)
- After skill_create/update: spawn embed_skill
- After repo create/update in fctool: spawn embed_repo
- Wire EmbedService through AppService, available for all triggers
